Version 1
This pipeline tests each WGS sample, independently. If a sample fails this test, then it is excluded from the aggregation and not released or reported in this document. These tests detect sample swaps, cross-individual contamination, and sample preparation/sequencing errors. The list of specific QC processes is listed in the table below:
QC procedure | Criteria |
Sequencing metrics | for sample sequenced before Oct 2023: Autosomal mean depth of coverage >= 15 X for samples sequenced after Oct 2023:
Median insert size : >= 250 |
Genomic Data Categories
Bioinformatics Pipelines
إنجليزية